Publications

Found 225 results

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B
Bertens, L.M.F., Kleijn J., Hille S.C., Heiner M., Koutny M., Verbeek F.J. (2015) Modeling biological gradient formation: combining partial differential equations and Petri nets Natural Computing.
Bertens, L.M., Slob J., Verbeek F.J. (2011) A generic organ based ontology system, applied to vertebrate heart anatomy, development and physiology Journal of Integrative Bioinformatics 8.
Bertens, L.M.F. (2012) Computerised Modelling for Developmental Biology - An exploration with case studies , Leiden, The Netherlands, Leiden university.
Bomer, N., den Hollander W., Ramos Y.F.M., Bos S.D., van der Breggen R., Lakenberg N., Pepers B.A., van Eeden A.E., Darvishan A., Tobi E.W., Duijnisveld B.J., van den Akker E.B., Heijmans B.T., van Roon-Mom W.M., et al. (2014) Underlying molecular mechanisms of DIO2 susceptibility in symptomatic osteoarthritis. Ann Rheum Dis. Abstract
de Bono, B., Kasteleyn P., Potikanond D., Kokash N., Verbeek, F J., Grenon P. (2012) Tissue Motifs and Multi-scale Transport Physiology Workshop of Ontologies in Biomedicine and Life Sciences.
ter Braak, B., Siezen C., Speksnijder E.N., Koedoot E., van Steeg H., Salvatori D., van de Water B., van der Laan J. (2015) Mammary gland tumor promotion by chronic administration of IGF1 and the insulin analogue AspB10 in the p53R270H/+WAPCre mouse model Breast Cancer Research 17 (1) p. 14.
ter Braak, B., Wink S., Koedoot E., Pont C., Siezen C., van der Laan J.W., van de Water B. (2015) Alternative signaling network activation through different insulin receptor family members caused by pro-mitogenic antidiabetic insulin analogues in human mammary epithelial cells Breast Cancer Research 17 (1).
ter Braak, B., Siezen C.L.E., Kannegieter N., Koedoot E., van de Water B., van der Laan J.W. (2014) Classifying the adverse mitogenic mode of action of insulin analogues using a novel mechanism-based genetically engineered human breast cancer cell panel Archives of Toxicology 88 (4) p. 953 - 966.
Bronsveld, H.K., ter Braak B., Karlstad Ø., Vestergaard P., Starup-Linde J., Bazelier M.T., De Bruin M.L., de Boer A., Siezen C.L.E., van de Water B., van der Laan J.W., Schmidt M.K. (2015) Treatment with insulin (analogues) and breast cancer risk in diabetics; a systematic review and meta-analysis of in vitro, animal and human evidence Breast Cancer Research 17 (1).
ten Bruggencate, F., Laroche F., Zhang Y., Song G., Yin S., Abrahams J.P., Liu Z. (2013) Visualizing the localization of transfection complexes during graphene nanoparticle-based transfection Journal of Materials Chemistry B 1 (46): Springer p. 6353.
C
Camargo Coelho, J., F. V. (2014) Pointing Task Evaluation of Gestural Interface Interaction in 3D Virtual Environment. Ceating the difference: Proceedings of the Chi Sparks 2014 Conference, The Hague, the Netherlands, The Hague University of Applied Sciences , The Netherlands and Chi Nederland , the Dutch association promoting Human - Computer Interaction in The Netherlands (www.chi - nederland.nl).
Cao, L., Verbeek F.J. (2012) Evaluation of algorithms for point cloud surface reconstruction through the analysis of shape parameters IS&T/SPIE Electronic Imaging 8290, Burlingame, California, USA, SPIE p. 82900G.
Cao, L., Verbeek F.J. (2013) Analytical evaluation of algorithms for point cloud surface reconstruction using shape features Journal of Electronic Imaging 22 (4), Totowa, NJ, Humana Press p. 043008.
Cao, L. (2014) Nature Inspired Phenotype Analysis with 3D Model Representation Optimization 4th International Conference on Innovations in Bio-Inspired Computing and Applications, IBICA 2013 237 (4), Ostrava, Czech Republic, Springer International Publishing p. 165 - 174.
Carreira, R.J., Shyti R., Balluff B., Abdelmoula W.M., van Heiningen S.H., van Zeijl R.J., Dijkstra J., Ferrari M.D., Tolner E.A., McDonnell L.A., van den Maagdenberg A.M.J.M. (2015) Large-Scale Mass Spectrometry Imaging Investigation of Consequences of Cortical Spreading Depression in a Transgenic Mouse Model of Migraine Journal of The American Society for Mass Spectrometry 26 (6) p. 853 - 861. Abstract
Carreras Puigvert, J., von Stechow L., Siddappa R., Pines A., Bahjat M., Haazen L.C.J.M., Olsen J.V., Vrieling H.H., Meerman J.H.N., Mullenders L.H.F., van de Water B., Danen E.H.J. (2013) Systems Biology Approach Identifies the Kinase Csnk1a1 as a Regulator of the DNA Damage Response in Embryonic Stem Cells Science Signaling 6 (259): Springer p. ra5 - ra5.
Carvalho, R.V., Davids W., Meijer A.H., Verbeek F.J. (2012) Spatio-temporal Modeling and Simulation of Mycobacterium Pathogenesis Using Petri Nets Bio-Inspired Models of Networks, Information, and Computing Systems. 6th International ICST Conference, BIONETICS 2011, York, UK, December 5-6, 2011, Revised Selected Papers 103, Berlin, Heidelberg, Springer Berlin Heidelberg p. 236 - 241.
Carvalho, R., de Sonneville J., Stockhammer O.W., Savage N.D.L., Veneman W.J., Ottenhoff T.H.M., Dirks R.P., Meijer A.H., Spaink H.P. (2010) A High-Throughput Screen for Tuberculosis Progression PLoS ONE 6 (2) p. e16779.
Carvalho, R., van den Heuvel J., Kleijn J., Verbeek F. (2015) Coupling of Petri Net Models of the Mycobacterial Infection Process and Innate Immune Response Computation 3 (2) p. 150 - 176. Abstract
Carvalho, R.V., Kleijn J., Verbeek F. (2014) A multi-scale extensive Petri Net model of the bacterial-macrophage interaction. Proceedings of the 5th International Workshop on Biological Processes & Petri Nets. CEUR Workshop Proceedings, Tunis, Tunesia.
Carvalho, R.V., Kleijn J., Meijer A.H., Verbeek F.J. (2012) Modeling Innate Immune Response to Early Mycobacterium Infection Computational and Mathematical Methods in Medicine 2012128163762121032128254874 (7101-246131) p. 1 - 12.
Celler, K., Koning R.I., Koster A.J., van Wezel G.P. (2013) Multidimensional View of the Bacterial Cytoskeleton Journal of Bacteriology 195 (8): Springer p. 1627 - 1636.
Chatzigeorgiou, A., Seijkens T., Zarzycka B., Engel D., Poggi M., van den Berg S., van den Berg S., Soehnlein O., Winkels H., Beckers L., Lievens D., Driessen A., Kusters P., Biessen E., et al. (2014) Blocking CD40-TRAF6 signaling is a therapeutic target in obesity-associated insulin resistance Proceedings of the National Academy of Sciences 111 (7), Totowa, NJ, Humana Press p. 2686 - 2691.
Coelho, J.C., Verbeek F.J. (2014) The Leap Motion Controller in a 3D Virtual Environment: Explorations and Evaluations of Pointing Tasks. Proceedings of the 8th International Conference on Interfaces and Human Computer Interaction (IHCI), Lisbon, Portugal.
D
Damiano, L., Le Dévédec S.E., Di Stefano P., Repetto D., Lalai R., Truong H.H., Xiong J.J.L., Danen E.H.J., Yan K.K., Verbeek F.J., De Luca E., Attanasio F., Buccione R., Turco E., et al. (2011) p140Cap suppresses the invasive properties of highly metastatic MTLn3-EGFR cells via impaired cortactin phosphorylation Oncogene.