Publications

Found 226 results

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2011
Jiang, L., Georgieva D., Abrahams J.P. (2011) EDIFF : a program for automated unit-cell determination and indexing of electron diffraction data Journal of Applied Crystallography 44 (5) p. 1132 - 1136.
Mueller, D., Vossen D., Hulsken B. (2011) Real-time deformable registration of multi-modal whole slides for digital pathology Computerized Medical Imaging and Graphics 35 (7-8) p. 542 - 556.
Jiang, L., Georgieva D., Nederlof I., Liu Z., Abrahams J.P. (2011) Image Processing and Lattice Determination for Three-Dimensional Nanocrystals Microscopy and Microanalysis 17 (06) p. 879 - 885.
Hawrylycz, M., Baldock R.A., Burger A., Hashikawa T., Johnson A.G., Martone M., Ng L., Lau C., Larsen S.D., Nissanov J., Puelles L., Ruffins S., Verbeek F.J., Zaslavsky I., et al. (2011) Digital Atlasing and Standardization in the Mouse Brain PLoS Computational Biology 7 (2) p. e1001065.
Potikanond, D., Verbeek F.J. (2011) 3D Visual Integration of Spatio-Temporal Gene Expression Patterns on Digital Atlas of Zebrafish Embryo using Web Services International Conference of Advances in Communication and Information Technology (CIT 2011), Amsterdam p. 56-62.
Sikharulidze, I., van Gastel R., Schramm S., Abrahams J.P., Poelsema B., Tromp R.M., van der Molen S.J. (2011) Low energy electron microscopy imaging using Medipix2 detector Nuclear Instruments and Methods in Physics Research, Section A 633 p. S239 - S242.
Hendriks, G., Atallah M., Raamsman M., Morolli B., van der Putten H., Jaadar H., Tijdens I., Esveldt-van Lange R., Mullenders L., van de Water B., Vrieling H.H. (2011) Sensitive DsRed fluorescence-based reporter cell systems for genotoxicity and oxidative stress assessment Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis 709-710 p. 49 - 59.
2012
Larios, E., Zhang Y., Yan K.K., Di Z., LeDévédec S., Groffen F., Verbeek F.J. (2012) Automation in Cytomics: A Modern RDBMS Based Platform for Image Analysis and Management in High-Throughput Screening Experiments Health Information Science. First International Conference, HIS 2012, Beijing, China, April 8-10, 2012. Proceedings 7231, Berlin, Heidelberg, Springer Berlin Heidelberg p. 76 - 87.
Kok, J.N., Lamprecht A.L., Verbeek F.J., Wilkinson M.D. (2012) Bioscientific Data Processing and Modeling Leveraging Applications of Formal Methods, Verification and Validation. Applications and Case Studies. 7610, Berlin, Heidelberg, Springer Berlin Heidelberg p. 7 - 11.
Bertens, L.M.F. (2012) Computerised Modelling for Developmental Biology - An exploration with case studies , Leiden, The Netherlands, Leiden university.
Nezhinsky, A.E., Verbeek F.J. (2012) Efficient and Robust Shape Retrieval from Deformable Templates Leveraging Applications of Formal Methods, Verification and Validation. Applications and Case Studies 7610, Berlin, Heidelberg, Springer Berlin Heidelberg p. 42 - 55.
Cao, L., Verbeek F.J. (2012) Evaluation of algorithms for point cloud surface reconstruction through the analysis of shape parameters IS&T/SPIE Electronic Imaging 8290, Burlingame, California, USA, SPIE p. 82900G.
den Heijer, G.J., van der Putten P.W.H., Benard E.L., Meijer A., Verbeek F.J. (2012) Explorations in Texture Based Classification for Bacterial Infection in Zebrafish Proceedings BENELEARN 2012 p. 13-18.
Yan, K.K., Verbeek F.J. (2012) Segmentation for High-Throughput Image Analysis: Watershed Masked Clustering Leveraging Applications of Formal Methods, Verification and Validation. Applications and Case Studies 7610, Berlin, Heidelberg, Springer Berlin Heidelberg p. 25 - 41.
Carvalho, R.V., Davids W., Meijer A.H., Verbeek F.J. (2012) Spatio-temporal Modeling and Simulation of Mycobacterium Pathogenesis Using Petri Nets Bio-Inspired Models of Networks, Information, and Computing Systems. 6th International ICST Conference, BIONETICS 2011, York, UK, December 5-6, 2011, Revised Selected Papers 103, Berlin, Heidelberg, Springer Berlin Heidelberg p. 236 - 241.
Sanchez-Faddeev, H., Emmerich M.T.M., Verbeek F.J., Henry A.H., Grimshaw S., Spaink H.P., van Vlijmen H.W., Bender A. (2012) Using Multiobjective Optimization and Energy Minimization to Design an Isoform-Selective Ligand of the 14-3-3 Protein Leveraging Applications of Formal Methods, Verification and Validation. Applications and Case Studies 7610, Berlin, Heidelberg, Springer Berlin Heidelberg p. 12 - 24.
Potikanond, D., Verbeek F.J. (2012) Visualization and analysis of 3D gene expression patterns in zebrafish using web services IS&T/SPIE Electronic ImagingVisualization and Data Analysis 2012 8294, Burlingame, California, USA, SPIE p. 829412.
Tleis, M., Verbeek F.J. (2012) Yeast-Cells Features Extraction Plugin ImageJ Conference 2012.
Hendriks, G., Atallah M., Morolli B., Calleja F., Ras-Verloop N., Huijskens I., Raamsman M., van de Water B., Vrieling H.H. (2012) The ToxTracker Assay: Novel GFP Reporter Systems that Provide Mechanistic Insight into the Genotoxic Properties of Chemicals Toxicological Sciences 125 (1) p. 285 - 298.
Nezhinsky, A.E., Stoop E., van der Sar A., Verbeek F.J. (2012) Numerical Analysis of Image Based High-Througput Zebrafish Infection Screens: Matching Meaning with Data. BIOINFORMATICS 2012, Proceedings of the Int. Conf. on Bioinformatics Models, Methods and Algorithms, Vilamoura, Algarve, Portugal.
Vink, J.P., VAN LEEUWEN M.B., VAN DEURZEN C.H.M., DE HAAN G. (2012) Efficient nucleus detector in histopathology images Journal of Microscopy 249 (2) p. 124 - 135.
Liu, Z., Galli F., Waterreus W.-J., Meulenbroek E., Koning R.I., Lamers G.E.M., Olsthoorn R.C.L., Pannu N., Oosterkamp T.H., Koster A.J., Dame R.T., Abrahams J.P. (2012) Single-Walled Carbon Nanotubes as Scaffolds to Concentrate DNA for the Study of DNA-Protein Interactions ChemPhysChem 13 (6) p. 1569 - 1575.
Nezhinsky, A., Stoop E.J., Vasylevska A.A., van der Sar A.M., Verbeek F.J. (2012) Spatial Analysis of Bacterial Infection Patterns in Zebrafish Proceedings 21th Annual Belgian-Dutch Conference on Machine Learning, Gent, Belgium.
Jiménez, N., Post J.A. (2012) A Novel Approach for Intracellular 3D Immuno-Labeling for Electron Tomography Traffic 13 (7) p. 926 - 933.