Publications

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D
Daskalopoulos, E.P., Hermans K.C.M., Blankesteijn M.W. (2014) Cardiac (myo)fibroblast: Novel strategies for its targeting following myocardial infarction. Curr Pharm Des 20 (12) p. 1987-2002. Abstract
Daskalopoulos, E.P., Hermans K.C.M., Janssen B.J.A., Matthijs Blankesteijn W. (2013) Targeting the Wnt/frizzled signaling pathway after myocardial infarction: A new tool in the therapeutic toolbox? Trends in Cardiovascular Medicine 23 (4), Totowa, NJ, Humana Press p. 121 - 127.
Daskalopoulos, E.P., Janssen B.J.A., Blankesteijn W.M. (2013) Targeting Wnt Signaling to Improve Wound Healing After Myocardial Infarction Wound Regeneration and Repair : Methods and Protocols 1037 (4), Totowa, NJ, Humana Press p. 355 - 380.
Dekker, T.J.A., Jones E.A., Corver W.E., van Zeijl R.J.M., Deelder A.M., Tollenaar R.A.E.M., Mesker W.E., Morreau H., McDonnell L.A. (2015) Towards imaging metabolic pathways in tissues Analytical and Bioanalytical Chemistry 407 (8) p. 2167 - 2176.
Dekker, T.J.A., Balluff B.D., Jones E.A., Schöne C.D., Schmitt M., Aubele M., Kroep J.R., Smit V.T.H.B.M., Tollenaar R.A.E.M., Mesker W.E., Walch A., McDonnell L.A. (2014) Multicenter Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry Imaging (MALDI MSI) Identifies Proteomic Differences in Breast-Cancer-Associated Stroma Journal of Proteome Research 13 (11) p. 4730 - 4738.
Di, Z., Klop M.J.D., Rogkoti V.-M., Le Dévédec S.E., van de Water B., Verbeek F.J., Price L.S., Meerman J.H.N. (2014) Ultra High Content Image Analysis and Phenotype Profiling of 3D Cultured Micro-Tissues PLoS ONE 9 (10) p. e109688.
Di, Z., Herpers B., Fredriksson L., Yan K., van de Water B., Verbeek F.J., Meerman J.H.N. (2013) Automated Analysis of NF-κB Nuclear Translocation Kinetics in High-Throughput Screening PLoS ONE 7 (12): Springer p. e52337.
Diebolder, C.A., Koster A.J., Koning R.I. (2012) Pushing the resolution limits in cryo electron tomography of biological structures Journal of Microscopy 248 (1) p. 1 - 5.
Diebolder, C. A., Halff E. F., Koster A. J., Huizinga E. G., Koning R. I. (2015) Cryoelectron Tomography of the NAIP5/NLRC4 Inflammasome: Implications for NLR Activation Structure 23 (12) p. 2349 - 2357. Abstract
Dijkgraaf, I., Van de Vijver P., Dirksen A., Hackeng T.M. (2013) Synthesis and application of cNGR-containing imaging agents for detection of angiogenesis Bioorganic & Medicinal Chemistry 21 (12), Totowa, NJ, Humana Press p. 3555 - 3564.
Driessen, M., Kienhuis A.S., Pennings J.L.A., Pronk T.E., Brandhof E.-J., Roodbergen M., Spaink H.P., Water B., Ven L.T.M. (2013) Exploring the zebrafish embryo as an alternative model for the evaluation of liver toxicity by histopathology and expression profiling Archives of Toxicology 87 (5): Springer p. 807 - 823.
E
Elks, P.M., van der Vaart M., van Hensbergen V., Schutz E., Redd M.J., Murayama E., Spaink H.P., Meijer A.H. (2014) Mycobacteria counteract a TLR-mediated nitrosative defense mechanism in a zebrafish infection model. PLoS One 9 (6) p. e100928. Abstract
F
Faas, F.G.A., Avramut M.C., M. van den Berg B., Mommaas A.M., Koster A.J., Ravelli R.B.G. (2012) Virtual nanoscopy: Generation of ultra-large high resolution electron microscopy maps The Journal of Cell Biology 198 (393473371-482104429822311Pt 1412343321131221542436214111131) p. 457 - 469.
Faas, F.G.A., Bárcena M., Agronskaia A.V., Gerritsen H.C., Moscicka K.B., Diebolder C.A., van Driel L.F., Limpens R.W.A.L., Bos E., Ravelli R.B.G., Koning R.I., Koster A.J. (2013) Localization of fluorescently labeled structures in frozen-hydrated samples using integrated light electron microscopy Journal of Structural Biology 181 (3): Springer p. 283 - 290.
Fitzsimons, C.P., van Hooijdonk L.W.A., Schouten M., Zalachoras I., Brinks V., Zheng T., Schouten T.G., Saaltink D.J., Dijkmans T., Steindler D.A., Verhaagen J., Verbeek F.J., Lucassen P.J., de Kloet E.R., et al. (2013) Knockdown of the glucocorticoid receptor alters functional integration of newborn neurons in the adult hippocampus and impairs fear-motivated behavior Molecular Psychiatry 18 (9) p. 993 - 1005.
Fredriksson, L., Wink S., Herpers B., Benedetti G., Hadi M., de Bont H., Groothuis G., Luijten M., Danen E., de Graauw M., Meerman J., van de Water B. (2014) Drug-induced endoplasmic reticulum and oxidative stress responses independently sensitize toward TNFα-mediated hepatotoxicity. Toxicol Sci 140 (1) p. 144-59. Abstract
Fredriksson, L., Herpers B., Benedetti G., Matadin Q., Puigvert J.C., de Bont H., Dragovic S., Vermeulen N.P.E., Commandeur J.N.M., Danen E.H.J., de Graauw M., van de Water B. (2011) Diclofenac inhibits tumor necrosis factor-α-induced nuclear factor-κB activation causing synergistic hepatocyte apoptosis Hepatology 53 (6) p. 2027 - 2041.
G
van Genderen, E., Clabbers M.T.B., Das P.P., Stewart A., Nederlof I., Barentsen K.C., Portillo Q., Pannu N.S., Nicolopoulos S., Gruene T., Abrahams J.P. (2016) Ab initio structure determination of nanocrystals of organic pharmaceutical compounds by electron diffraction at room temperature using a Timepix quantum area direct electron detector Acta Crystallographica Section A Foundations and Advances (2) p. 236 - 242.
van Genderen, E., Li Y.-W., Nederlof I., Abrahams J.P. (2016) Lattice filter for processing image data of three-dimensional protein nanocrystals Acta Crystallographica Section D Structural Biology 7215621335069691855043 (1) p. 34 - 39.
Georgieva, D., Jansen J., Sikharulidze I., Jiang L., Zandbergen H.W., Abrahams J.P. (2011) Evaluation of Medipix2 detector for recording electron diffraction data in low dose conditions Journal of Instrumentation 6 (01) p. C01033 - C01033.
Ghotra, V.P.S., He S., de Bont H., van der Ent W., Spaink H.P., van de Water B., Snaar-Jagalska E.B., Danen E.H.J. (2012) Automated Whole Animal Bio-Imaging Assay for Human Cancer Dissemination PLoS ONE 7 (2) p. e31281.
Ghotra, V.P.S. (2013) Identification of novel targets in prostate cancer progression , Leiden, The Netherlands, Leiden University.
Gómez - Maureira, M., Teunisse C., Schraffenberger H., Verbeek F. (2014) Illuminating Shadows: Introducing Shadow Interaction in Spatial Augmented Reality Ceating the difference: Proceedings of the Chi Sparks 2014 Conference, The Hague, the Netherlands, The Hague University of Applied Sciences , The Netherlands and Chi Nederland , the Dutch association promoting Human - Computer Interaction in The Netherlands (www.chi - nederland.nl).
de Graauw, M., Cao L., Winkel L., van Miltenburg M.H.A.M., le Dévédec S.E., Klop M., Yan K.K., Pont C., Rogkoti V.-M., Tijsma A., Chaudhuri A., Lalai R., Price L., Verbeek F., et al. (2014) Annexin A2 depletion delays EGFR endocytic trafficking via cofilin activation and enhances EGFR signaling and metastasis formation Oncogene 33 (20), Totowa, NJ, Humana Press p. 2610 - 2619.