Publications

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Jiménez, N., Krouwer V.J.D., Post J.A. (2013) A new, rapid and reproducible method to obtain high quality endothelium in vitro Cytotechnology 65 (1), Totowa, NJ, Humana Press p. 1 - 14.
Jones, E.A., Zeijl R.J.M., Andrén P.E., Deelder A.M., Wolters L., McDonnell L.A. (2012) High Speed Data Processing for Imaging MS-Based Molecular Histology Using Graphical Processing Units Journal of The American Society for Mass Spectrometry 23 (4) p. 745 - 752.
Jones, E.A., Shyti R., van Zeijl R.J.M., van Heiningen S.H., Ferrari M.D., Deelder A.M., Tolner E.A., van den Maagdenberg A.M.J.M., McDonnell L.A. (2012) Imaging mass spectrometry to visualize biomolecule distributions in mouse brain tissue following hemispheric cortical spreading depression Journal of Proteomics 75 (16) p. 5027 - 5035.
Jones, E.A., Schmitz N., Waaijer C.J.F., Frese C.K., van Remoortere A., van Zeijl R.J.M., Heck A.J.R., Hogendoorn P.C.W., Deelder A.M., Altelaar M.A.F., Bovée J.V.M.G., McDonnell L.A. (2013) Imaging Mass Spectrometry-based Molecular Histology Differentiates Microscopically Identical and Heterogeneous Tumors Journal of Proteome Research 12 (4): Elsevier p. 1847 - 1855.
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Kallergi, A., Verbeek F.J. (2014) Playful Interfaces for Scientific Image Data: a Case for Storytelling Emerging Research and Trends in Interactivity and the Human-Computer Interface (4): IGI Global p. 471-489.
Kallergi, A. (2012) Connecting the Dots, Playful interactions with Scientific Data in Repositories , Leiden, The Netherlands, Leiden University.
Kanwal, Z., Zakrzewska A., den Hertog J., Spaink H.P., Schaaf M.J.M., Meijer A.H. (2013) Deficiency in Hematopoietic Phosphatase Ptpn6/Shp1 Hyperactivates the Innate Immune System and Impairs Control of Bacterial Infections in Zebrafish Embryos The Journal of Immunology 190 (4): Springer p. 1631 - 1645.
Knoops, K., Bárcena M., Limpens R.W.A.L., Koster A.J., Mommaas M.A., Snijder E.J. (2012) Ultrastructural characterization of arterivirus replication structures: reshaping the endoplasmic reticulum to accommodate viral RNA synthesis. J Virol 86 (5) p. 2474-87. Abstract
Kok, J.N., Lamprecht A.L., Verbeek F.J., Wilkinson M.D. (2012) Bioscientific Data Processing and Modeling Leveraging Applications of Formal Methods, Verification and Validation. Applications and Case Studies. 7610, Berlin, Heidelberg, Springer Berlin Heidelberg p. 7 - 11.
van der Kolk, A.G., Zwanenburg J.J.M., Denswil N.P., Vink A., Spliet W.G.M., Daemen M.J.A.P., Visser F., Klomp D.W.J., Luijten P.R., Hendrikse J. (2014) Imaging the Intracranial Atherosclerotic Vessel Wall Using 7T MRI: Initial Comparison with Histopathology American Journal of Neuroradiology.
Koning, R.I., de Breij A., Oostergetel G.T., Nibbering P.H., Koster A.J., Dijkshoorn L. (2013) Cryo-electron tomography analysis of membrane vesicles from Acinetobacter baumannii ATCC19606T Research in Microbiology 164 (5): Springer p. 397 - 405.
Koning, R.I., Celler K., Willemse J., Bos E., van Wezel G.P., Koster A.J. (2014) Correlative cryo-fluorescence light microscopy and cryo-electron tomography of Streptomyces. 124: Elsevier p. 217 - 239.
Koning, R.I., Koster A.J. (2012) Cellular Nanoimaging by Cryo Electron Tomography Nanoimaging : Methods and Protocols 950, Totowa, NJ, Humana Press p. 227 - 251.
Koning, R.I., Kutchoukov V.G., Hagen C.W., Koster A.J. (2013) Nanofabrication of a gold fiducial array on specimen support for electron tomography Ultramicroscopy 135: Springer p. 99 - 104.
Koning, R.I., Faas F.G., Boonekamp M., de Visser B., Janse J., Wiegant J.C., de Breij A., Willemse J., Nibbering P.H., Tanke H.J., Koster A.J. (2014) MAVIS: An integrated system for live microscopy and vitrification Ultramicroscopy 143 (45): Springer p. 67 - 76.
Krouwer, V.J.D., Hekking L.H.P., Langelaar-Makkinje M., Regan-Klapisz E., Post J. (2012) Endothelial cell senescence is associated with disrupted cell-cell junctions and increased monolayer permeability Vascular Cell 4 (1) p. 12.
Kuijpers, M., van Dis V., Haasdijk E.D., Harterink M., Vocking K., Post J.A., Scheper W., Hoogenraad C.C., Jaarsma D. (2013) Amyotrophic lateral sclerosis (ALS)-associated VAPB-P56S inclusions represent an ER quality control compartment Acta Neuropathologica Communications 1 (1), Totowa, NJ, Humana Press p. 24.
Kuzmanic, A., Pannu N.S., Zagrovic B. (2014) X-ray refinement significantly underestimates the level of microscopic heterogeneity in biomolecular crystals Nature Communications 5 (2), Totowa, NJ, Humana Press p. 1363 - 1371.
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Labbé, C.M., Kuenemann M.A., Zarzycka B., Vriend G., Nicolaes G.A.F., Lagorce D., Miteva M.A., Villoutreix B.O., Sperandio O. (2015) iPPI-DB: an online database of modulators of protein–protein interactions Nucleic Acids Research 44 (D1) p. D542 - D547.
Laeremans, H., Hackeng T.M., van Zandvoort M.A.M.J., Thijssen V.L.J.L., Janssen B.J.A., Ottenheijm H.C.J., Smits J.F.M., Blankesteijn W.M. (2011) Blocking of Frizzled Signaling With a Homologous Peptide Fragment of Wnt3a/Wnt5a Reduces Infarct Expansion and Prevents the Development of Heart Failure After Myocardial Infarction Circulation 124 (15) p. 1626 - 1635.
Lamers, M.H., van der Putten P.H.W., Verbeek F.J. (2014) Observations on Tinkering in Scientific Education Human–Computer Interaction Series. Entertaining the Whole World., London, Springer London p. 137 - 145.
Lamers, M.H., Verbeek F.J., Putten van der P.H.W. (2013) Tinkering in scientific education ACE 2013: Springer p. 568-571.
Larios, E., Zhang Y., Cao L., Verbeek F.J. (2014) CytomicsDB: A Metadata-Based Storage and Retrieval Approach for High-Throughput Screening Experiments Pattern Recognition in Bioinformatics 8626, Cham, Springer International Publishing p. 72 - 84.
Larios, E., Zhang Y., Yan K.K., Di Z., LeDévédec S., Groffen F., Verbeek F.J. (2012) Automation in Cytomics: A Modern RDBMS Based Platform for Image Analysis and Management in High-Throughput Screening Experiments Health Information Science. First International Conference, HIS 2012, Beijing, China, April 8-10, 2012. Proceedings 7231, Berlin, Heidelberg, Springer Berlin Heidelberg p. 76 - 87.