Publications

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Balcioglu, H.E., van Hoorn H., Donato D.M., Schmidt T., Danen E.H.J. (2015) The integrin expression profile modulates orientation and dynamics of force transmission at cell-matrix adhesions Journal of Cell Science 128 (7) p. 1316 - 1326.
Baranski, Z., Booij T.H., Kuijjer M.L., de Jong Y., Cleton-Jansen A.-M., Price L.S., van de Water B., Bovée J.V.M.G., Hogendoorn P.C.W., Danen E.H.J. (2015) MEK inhibition induces apoptosis in osteosarcoma cells with constitutive ERK1/2 phosphorylation. Genes Cancer 6 (11-12) p. 503-12. Abstract
Baranski, Z., Booij T.H., Cleton-Jansen A.-M., Price L.S., van de Water B., Bovée J.V.M.G., Hogendoorn P.C.W., Danen E.H.J. (2015) Aven-mediated checkpoint kinase control regulates proliferation and resistance to chemotherapy in conventional osteosarcoma The Journal of Pathology 236 (3) p. 348 - 359.
Bebeacua, C., Tremblay D., Farenc C., Chapot-Chartier M.-P., Sadovskaya I., van Heel M., Veesler D., Moineau S., Cambillau C. (2013) Structure, Adsorption to Host, and Infection Mechanism of Virulent Lactococcal Phage p2 Journal of Virology 87 (22): Springer p. 12302 - 12312.
Bebeacua, C., Lai L., Vegge C.S., Brondsted L., van Heel M., Veesler D., Cambillau C. (2013) Visualizing a Complete Siphoviridae Member by Single-Particle Electron Microscopy: the Structure of Lactococcal Phage TP901-1 Journal of Virology 87 (2): Springer p. 1061 - 1068.
Belmamoune, M., Potikanond D., Verbeek F.J. (2010) Mining and analysing spatio-temporal patterns of gene expression in an integrative database framework Journal of Integrative Bioinformatics 7.
Benard, E.L., Racz P.I., Rougeot J., Nezhinsky A.E., Verbeek F.J., Spaink H.P., Meijer A.H. (2014) Macrophage-Expressed Perforins Mpeg1 and Mpeg1.2 Have an Anti-Bacterial Function in Zebrafish Journal of Innate Immunity 7 (2) p. 136 - 152.
Benard, E.L., Racz P.I., Rougeot J., Nezhinsky A.E., Verbeek F.J., Spaink H.P., Meijer A.H. (2015) Macrophage-expressed perforins mpeg1 and mpeg1.2 have an anti-bacterial function in zebrafish. J Innate Immun 7 (2) p. 136-52. Abstract
Bendall, S.C., Simonds E.F., Qiu P., Amir E.-a D., Krutzik P.O., Finck R., Bruggner R.V., Melamed R., Trejo A., Ornatsky O.I., Balderas R.S., Plevritis S.K., Sachs K., Pe'er D., et al. (2011) Single-Cell Mass Cytometry of Differential Immune and Drug Responses Across a Human Hematopoietic Continuum Science 332 (6030) p. 687 - 696.
Benedetti, G., Fokkelman M., Yan K.K., Fredriksson L., Herpers B., Meerman J., van de Water B., de Graauw M. (2013) The Nuclear Factor  κB Family Member RelB Facilitates Apoptosis of Renal Epithelial Cells Caused by Cisplatin/Tumor Necrosis Factor   Synergy by Suppressing an Epithelial to Mesenchymal Transition-Like Phenotypic Switch Molecular Pharmacology 84 (1): Springer p. 128 - 138.
Benedetti, G., Ramaiahgaris S., Herpers B., van de Water B., Price L.S., de Graauw M. (2013) A screen for apoptotic synergism between clinical relevant nephrotoxicant and the cytokine TNF-α Toxicology in Vitro 27 (8), Totowa, NJ, Humana Press p. 2264 - 2272.
Benedetti, G. (2013) Role of TNF-α and the NF-κB pathway in drug-induced organ injuries , Leiden, The Netherlands, Leiden University.
Benedetti, G., Fredriksson L., Herpers B., Meerman J., van de Water B., de Graauw M. (2013) TNF-α-mediated NF-κB survival signaling impairment by cisplatin enhances JNK activation allowing synergistic apoptosis of renal proximal tubular cells Biochemical Pharmacology 85 (2): Springer p. 274 - 286.
van den Berg, S.M., Seijkens T.T.P., Kusters P.J.H., Zarzycka B., Beckers L., den Toom M., Gijbels M.J.J., Chatzigeorgiou A., Weber C., de Winther M.P.J., Chavakis T., Nicolaes G.A.F., Lutgens E. (2014) Blocking CD40-TRAF6 interactions by small-molecule inhibitor 6860766 ameliorates the complications of diet-induced obesity in mice International Journal of Obesity.
Bertens, L.M.F. (2012) Computerised Modelling for Developmental Biology - An exploration with case studies , Leiden, The Netherlands, Leiden university.
Bertens, L.M., Slob J., Verbeek F.J. (2011) A generic organ based ontology system, applied to vertebrate heart anatomy, development and physiology Journal of Integrative Bioinformatics 8.
Bertens, L.M.F., Kleijn J., Hille S.C., Heiner M., Koutny M., Verbeek F.J. (2015) Modeling biological gradient formation: combining partial differential equations and Petri nets Natural Computing.
Bomer, N., den Hollander W., Ramos Y.F.M., Bos S.D., van der Breggen R., Lakenberg N., Pepers B.A., van Eeden A.E., Darvishan A., Tobi E.W., Duijnisveld B.J., van den Akker E.B., Heijmans B.T., van Roon-Mom W.M., et al. (2014) Underlying molecular mechanisms of DIO2 susceptibility in symptomatic osteoarthritis. Ann Rheum Dis. Abstract
de Bono, B., Kasteleyn P., Potikanond D., Kokash N., Verbeek, F J., Grenon P. (2012) Tissue Motifs and Multi-scale Transport Physiology Workshop of Ontologies in Biomedicine and Life Sciences.
ter Braak, B., Siezen C., Speksnijder E.N., Koedoot E., van Steeg H., Salvatori D., van de Water B., van der Laan J. (2015) Mammary gland tumor promotion by chronic administration of IGF1 and the insulin analogue AspB10 in the p53R270H/+WAPCre mouse model Breast Cancer Research 17 (1) p. 14.
ter Braak, B., Wink S., Koedoot E., Pont C., Siezen C., van der Laan J.W., van de Water B. (2015) Alternative signaling network activation through different insulin receptor family members caused by pro-mitogenic antidiabetic insulin analogues in human mammary epithelial cells Breast Cancer Research 17 (1).
ter Braak, B., Siezen C.L.E., Kannegieter N., Koedoot E., van de Water B., van der Laan J.W. (2014) Classifying the adverse mitogenic mode of action of insulin analogues using a novel mechanism-based genetically engineered human breast cancer cell panel Archives of Toxicology 88 (4) p. 953 - 966.
Bronsveld, H.K., ter Braak B., Karlstad Ø., Vestergaard P., Starup-Linde J., Bazelier M.T., De Bruin M.L., de Boer A., Siezen C.L.E., van de Water B., van der Laan J.W., Schmidt M.K. (2015) Treatment with insulin (analogues) and breast cancer risk in diabetics; a systematic review and meta-analysis of in vitro, animal and human evidence Breast Cancer Research 17 (1).
ten Bruggencate, F., Laroche F., Zhang Y., Song G., Yin S., Abrahams J.P., Liu Z. (2013) Visualizing the localization of transfection complexes during graphene nanoparticle-based transfection Journal of Materials Chemistry B 1 (46): Springer p. 6353.