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Zarzycka, B., Nicolaes G.A.F., Lutgens E. (2015) Targeting the adaptive immune system: new strategies in the treatment of atherosclerosis Expert Review of Clinical Pharmacology 8 (3) p. 297 - 313.
Zarzycka, B., Kuenemann M.A., Miteva M.A., Nicolaes G.A.F., Vriend G., Sperandio O. (2016) Stabilization of protein–protein interaction complexes through small molecules Drug Discovery Today 21 (1) p. 48 - 57.
Zarzycka, B., Seijkens T., Nabuurs S.B., Ritschel T., Grommes J., Soehnlein O., Schrijver R., van Tiel C.M., Hackeng T.M., Weber C., Giehler F., Kieser A., Lutgens E., Vriend G., et al. (2015) Discovery of Small Molecule CD40–TRAF6 Inhibitors Journal of Chemical Information and Modeling 55 (2) p. 294 - 307.
Yizhak, K., Le Devedec S.E., Rogkoti V.M., Baenke F., de Boer V.C., Frezza C., Schulze A., van de Water B., Ruppin E. (2014) A computational study of the Warburg effect identifies metabolic targets inhibiting cancer migration Molecular Systems Biology 10 (8) p. 744 - 744.
Yizhak, K., Gaude E., Le Dévédec S., Waldman Y.Y., Stein G.Y., van de Water B., Frezza C., Ruppin E. (2014) Phenotype-based cell-specific metabolic modeling reveals metabolic liabilities of cancer eLife 3.
Yang, S., Marín-Juez R., Meijer A.H., Spaink H.P. (2015) Common and specific downstream signaling targets controlled by Tlr2 and Tlr5 innate immune signaling in zebrafish BMC Genomics 16 (12-3416611711794210539668327112369176111-21142443136118111-399241610101313166).
Yan, K.K., Verbeek F.J. (2012) Segmentation for High-Throughput Image Analysis: Watershed Masked Clustering Leveraging Applications of Formal Methods, Verification and Validation. Applications and Case Studies 7610, Berlin, Heidelberg, Springer Berlin Heidelberg p. 25 - 41.
Yan, K.K. (2013) Image Analysis and Platform Development for Automated Phenotyping in Cytomics , Leiden, The Netherlands, Leiden University.
de Winter, M.D.A., Mesman R.J., Hayles M.F., Schneijdenberg C.T.W.M., Mathisen C., Post J.A. (2013) In-situ integrity control of frozen-hydrated, vitreous lamellas prepared by the cryo-focused ion beam-scanning electron microscope Journal of Structural Biology 183 (1), Totowa, NJ, Humana Press p. 11 - 18.
Winn, M.D., Ballard C.C., Cowtan K.D., Dodson E.J., Emsley P., Evans P.R., Keegan R.M., Krissinel E.B., Leslie A.G.W., McCoy A., McNicholas S.J., Murshudov G.N., Pannu N.S., Potterton E.A., et al. (2011) Overview of the CCP 4 suite and current developments Acta Crystallographica Section D Biological Crystallography 67 (4) p. 235 - 242.
Wink, S., Hiemstra S., Huppelschoten S., Danen E., Niemeijer M., Hendriks G., Vrieling H., Herpers B., van de Water B. (2014) Quantitative High Content Imaging of Cellular Adaptive Stress Response Pathways in Toxicity for Chemical Safety Assessment Chemical Research in Toxicology 27 (3) p. 338 - 355.
Willems, S.M., van Remoortere A., van Zeijl R.J.M., Deelder A.M., McDonnell L.A., Hogendoorn P.C.W. (2010) Imaging mass spectrometry of myxoid sarcomas identifies proteins and lipids specific to tumour type and grade, and reveals biochemical intratumour heterogeneity Journal of Pathology 222 (4) p. 400 - 409.
Wang, J.-W., Valentijn K.M., de Boer H.C., Dirven R.J., van Zonneveld A.J., Koster A.J., Voorberg J., Reitsma P.H., Eikenboom J. (2011) Intracellular Storage and Regulated Secretion of Von Willebrand Factor in Quantitative Von Willebrand Disease Journal of Biological Chemistry 286 (27) p. 24180 - 24188.
Wallin, C., Kulkarni Y.S., Abelein A., Jarvet J., Liao Q., Strodel B., Olsson L., Luo J., Abrahams J.P., Sholts S.B., Roos P.M., Kamerlin S.C.L., Gräslund A., Wärmländer S.K.T.S. (2016) Characterization of Mn(II) ion binding to the amyloid-β peptide in Alzheimer’s disease Journal of Trace Elements in Medicine and Biology.
van Vliet, E., Daneshian M., Beilmann M., Davies A., Fava E., Fleck R., Julé Y., Kansy M., Kustermann S., Macko P., Mundy W.R., Roth A., Shah I., Uteng M., et al. (2014) Current approaches and future role of high content imaging in safety sciences and drug discovery. ALTEX 31 (4) p. 479-93. Abstract
Vink, J.P., VAN LEEUWEN M.B., VAN DEURZEN C.H.M., DE HAAN G. (2012) Efficient nucleus detector in histopathology images Journal of Microscopy 249 (2) p. 124 - 135.
Vink, J.P. (2013) Machine Learning for efficient object recognition , Eindhoven, The Netherlands, Eindhoven University of Technology.
van Verschuer, V.M.T., Hooning M.J., van Baare-Georgieva R.D., Hollestelle A., Timmermans A.M., Koppert L.B., Verhoog L.C., Martens J.W.M., Seynaeve C., van Deurzen C.H.M. (2015) Tumor-associated inflammation as a potential prognostic tool in BRCA1/2-associated breast cancer Human Pathology 46 (2) p. 182 - 190. Abstract
Verissimo, C.S., Elands R., Cheng S., Saaltink D.-J., ter Horst J.P., Alme M.N., Pont C., van de Water B., Håvik B., Fitzsimons C.P., Vreugdenhil E. (2013) Silencing of Doublecortin-Like (DCL) Results in Decreased Mitochondrial Activity and Delayed Neuroblastoma Tumor Growth PLoS ONE 8 (9), Totowa, NJ, Humana Press p. e75752.
Veneman, W.J., Marín-Juez R., de Sonneville J., Ordas A., Jong-Raadsen S., Meijer A.H., Spaink H.P. (2014) Establishment and optimization of a high throughput setup to study Staphylococcus epidermidis and Mycobacterium marinum infection as a model for drug discovery. J Vis Exp (88) p. e51649. Abstract
Veneman, W.J., Stockhammer O.W., de Boer L., Zaat S.A.J., Meijer A.H., Spaink H.P. (2013) A zebrafish high throughput screening system used for Staphylococcus epidermidis infection marker discovery BMC Genomics 14 (1): Springer p. 255.
Uitterdijk, A., Hermans K.C.M., de Wijs-Meijler D.P.M., Daskalopoulos E.P., Reiss I.K., Duncker D.J., Matthijs Blankesteijn W., Merkus D. (2016) UM206, a selective Frizzled antagonist, attenuates adverse remodeling after myocardial infarction in swine Laboratory Investigation 96 (2) p. 168 - 176.
Truong, H.H., Xiong J., Ghotra V.P.S., Nirmala E., Haazen L., Le Devedec S.E., Balcio lu H.E., He S., Snaar-Jagalska B.E., Vreugdenhil E., Meerman J.H.N., van de Water B., Danen E.H.J. (2014) β1 Integrin Inhibition Elicits a Prometastatic Switch Through the TGFβ-miR-200-ZEB Network in E-Cadherin-Positive Triple-Negative Breast Cancer Science Signaling 7 (312): Springer p. ra15 - ra15.
Truong, H.H., de Sonneville J., Ghotra V.P.S., Xiong J.J.L., Price L., Hogendoorn P.C.W., Spaink H.P., van de Water B., Danen E.H.J. (2012) Automated microinjection of cell-polymer suspensions in 3D ECM scaffolds for high-throughput quantitative cancer invasion screens Biomaterials 33 (1) p. 181 - 188.
Torraca, V., Cui C., Boland R., Bebelman J.-P., van der Sar A.M., Smit M.J., Siderius M., Spaink H.P., Meijer A.H. (2015) The CXCR3-CXCL11 signaling axis mediates macrophage recruitment and dissemination of mycobacterial infection Disease Models & Mechanisms 8 (3) p. 253 - 269.