Publications

Found 96 results

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2016
Herpers, B., Wink S., Fredriksson L., Di Z., Hendriks G., Vrieling H., de Bont H., van de Water B. (2016) Activation of the Nrf2 response by intrinsic hepatotoxic drugs correlates with suppression of NF-κB activation and sensitizes toward TNFα-induced cytotoxicity Archives of Toxicology 90 (5) p. 1163 - 1179.
Marques, A.R.A., Mirzaian M., Akiyama H., Wisse P., Ferraz M.J., Gaspar P., Ghauharali-van der Vlugt K., Meijer R., Giraldo P., Alfonso P., Irún P., Dahl M., Karlsson S., Pavlova E.V., et al. (2016) Glucosylated cholesterol in mammalian cells and tissues: formation and degradation by multiple cellular β-glucosidases Journal of Lipid Research 57 (3) p. 451 - 463.
Zarzycka, B., Kuenemann M.A., Miteva M.A., Nicolaes G.A.F., Vriend G., Sperandio O. (2016) Stabilization of protein–protein interaction complexes through small molecules Drug Discovery Today 21 (1) p. 48 - 57.
2015
Carvalho, R., van den Heuvel J., Kleijn J., Verbeek F. (2015) Coupling of Petri Net Models of the Mycobacterial Infection Process and Innate Immune Response Computation 3 (2) p. 150 - 176. Abstract
Punt, S., Thijssen V.L., Vrolijk J., de Kroon C.D., Gorter A., Jordanova E.S. (2015) Galectin-1, -3 and -9 Expression and Clinical Significance in Squamous Cervical Cancer PLOS ONE 10 (6) p. e0129119.
Gram, A.M., Oosenbrug T., Lindenbergh M.F.S., Büll C., Comvalius A., Dickson K.J.I., Wiegant J., Vrolijk H., Lebbink R.J., Wolterbeek R., Adema G.J., Griffioen M., Heemskerk M.H.M., Tscharke D.C., et al. (2015) The Epstein-Barr Virus Glycoprotein gp150 Forms an Immune-Evasive Glycan Shield at the Surface of Infected Cells PLOS Pathogens 12 (4) p. e1005550.
Harteveld, A.A., Denswil N.P., Siero J.C.W., Zwanenburg J.J.M., Vink A., Pouran B., Spliet W.G.M., Klomp D.W.J., Luijten P.R., Daemen M.J., Hendrikse J., van der Kolk A.G. (2015) Quantitative Intracranial Atherosclerotic Plaque Characterization at 7T MRI: An Ex Vivo Study with Histologic Validation. AJNR Am J Neuroradiol. Abstract
Benard, E.L., Racz P.I., Rougeot J., Nezhinsky A.E., Verbeek F.J., Spaink H.P., Meijer A.H. (2015) Macrophage-expressed perforins mpeg1 and mpeg1.2 have an anti-bacterial function in zebrafish. J Innate Immun 7 (2) p. 136-52. Abstract
Shakeri, M.S., Hulsken B., van Vliet L.J., Stallinga S. (2015) Optical quality assessment of whole slide imaging systems for digital pathology Optics Express 23 (2) p. 1319. Abstract
Bronsveld, H.K., ter Braak B., Karlstad Ø., Vestergaard P., Starup-Linde J., Bazelier M.T., De Bruin M.L., de Boer A., Siezen C.L.E., van de Water B., van der Laan J.W., Schmidt M.K. (2015) Treatment with insulin (analogues) and breast cancer risk in diabetics; a systematic review and meta-analysis of in vitro, animal and human evidence Breast Cancer Research 17 (1).
van Beuningen, S. F.B., Will L., Harterink M., Chazeau A., van Battum E. Y., Frias C. P., Franker M. A.M., Katrukha E. A., Stucchi R., Vocking K., Antunes A. T., Slenders L., Doulkeridou S., Sillevis Smitt P., et al. (2015) TRIM46 Controls Neuronal Polarity and Axon Specification by Driving the Formation of Parallel Microtubule Arrays Neuron 88 (6) p. 1208 - 1226. Abstract
Martin-Lorenzo, M., Balluff B., Maroto A.S., Carreira R.J., van Zeijl R.J.M., Gonzalez-Calero L., de la Cuesta F., Barderas M.G., Lopez-Almodovar L.F., Padial L.R., McDonnell L.A., Vivanco F., Alvarez-Llamas G. (2015) Lipid and protein maps defining arterial layers in atherosclerotic aorta Data in Brief 4 p. 328 - 331.
Martin-Lorenzo, M., Balluff B., Maroto A.S., Carreira R.J., van Zeijl R.J.M., Gonzalez-Calero L., de la Cuesta F., Barderas M.G., Lopez-Almodovar L.F., Padial L.R., McDonnell L.A., Vivanco F., Alvarez-Llamas G. (2015) Molecular anatomy of ascending aorta in atherosclerosis by MS Imaging: Specific lipid and protein patterns reflect pathology Journal of Proteomics 126 p. 245 - 251.
von Stechow, L., Typas D., Carreras Puigvert J., Oort L., Siddappa R., Pines A., Vrieling H., van de Water B., Mullenders L.H.F., Danen E.H.J. (2015) The E3 Ubiquitin Ligase ARIH1 Protects against Genotoxic Stress by Initiating a 4EHP-Mediated mRNA Translation Arrest Molecular and Cellular Biology 35 (7) p. 1254 - 1268.
Zarzycka, B., Seijkens T., Nabuurs S.B., Ritschel T., Grommes J., Soehnlein O., Schrijver R., van Tiel C.M., Hackeng T.M., Weber C., Giehler F., Kieser A., Lutgens E., Vriend G., et al. (2015) Discovery of Small Molecule CD40–TRAF6 Inhibitors Journal of Chemical Information and Modeling 55 (2) p. 294 - 307.
van Verschuer, V.M.T., Hooning M.J., van Baare-Georgieva R.D., Hollestelle A., Timmermans A.M., Koppert L.B., Verhoog L.C., Martens J.W.M., Seynaeve C., van Deurzen C.H.M. (2015) Tumor-associated inflammation as a potential prognostic tool in BRCA1/2-associated breast cancer Human Pathology 46 (2) p. 182 - 190. Abstract
Labbé, C.M., Kuenemann M.A., Zarzycka B., Vriend G., Nicolaes G.A.F., Lagorce D., Miteva M.A., Villoutreix B.O., Sperandio O. (2015) iPPI-DB: an online database of modulators of protein–protein interactions Nucleic Acids Research 44 (D1) p. D542 - D547.
Bertens, L.M.F., Kleijn J., Hille S.C., Heiner M., Koutny M., Verbeek F.J. (2015) Modeling biological gradient formation: combining partial differential equations and Petri nets Natural Computing.
2014
Slob, J., Verbeek F.J. (2014) Imaging Ontology, contributing to ‘reasonable’ semantics for biomedical repositories. the 6th International Symposium on Semantic Mining in Biomedicine (SMBM 2014), Aveiro, University of Aveiro.
Carvalho, R.V., Kleijn J., Verbeek F. (2014) A multi-scale extensive Petri Net model of the bacterial-macrophage interaction. Proceedings of the 5th International Workshop on Biological Processes & Petri Nets. CEUR Workshop Proceedings, Tunis, Tunesia.
Tleis, M., Verbeek F. (2014) Extracting contours of oval-shaped objects by Hough transform and minimal path algorithms SPIE Proceedings. Sixth International Conference on Digital Image Processing (ICDIP 2014) 9159, Athens, Greece, SPIE p. 915903.
Gómez - Maureira, M., Teunisse C., Schraffenberger H., Verbeek F. (2014) Illuminating Shadows: Introducing Shadow Interaction in Spatial Augmented Reality Ceating the difference: Proceedings of the Chi Sparks 2014 Conference, The Hague, the Netherlands, The Hague University of Applied Sciences , The Netherlands and Chi Nederland , the Dutch association promoting Human - Computer Interaction in The Netherlands (www.chi - nederland.nl).
Meijer, A.H., van der Vaart M., Spaink H.P. (2014) Real-time imaging and genetic dissection of host-microbe interactions in zebrafish. Cell Microbiol 16 (1) p. 39-49. Abstract
Bomer, N., den Hollander W., Ramos Y.F.M., Bos S.D., van der Breggen R., Lakenberg N., Pepers B.A., van Eeden A.E., Darvishan A., Tobi E.W., Duijnisveld B.J., van den Akker E.B., Heijmans B.T., van Roon-Mom W.M., et al. (2014) Underlying molecular mechanisms of DIO2 susceptibility in symptomatic osteoarthritis. Ann Rheum Dis. Abstract
van Vliet, E., Daneshian M., Beilmann M., Davies A., Fava E., Fleck R., Julé Y., Kansy M., Kustermann S., Macko P., Mundy W.R., Roth A., Shah I., Uteng M., et al. (2014) Current approaches and future role of high content imaging in safety sciences and drug discovery. ALTEX 31 (4) p. 479-93. Abstract